Difference between revisions of "Rocky R HelloWorld"
From NIMBioS
(Created page with "= R Code = '''helloworld.R''' <pre> print("Hello World!") </pre> = Batch Script = '''helloworld.run''' <pre> #SBATCH --job-name=R_HELLOWORLD #SBATCH --output=R_hello_%j.out module load R/4.2.1-foss-2022a Rscript helloworld. </pre> = Running Job = <pre> [test_user@rocky7 helloworld]$ pwd /home/test_user/projects/R/helloworld </pre> <pre> [test_user@rocky7 helloworld]$ ls helloworld.R helloworld.run </pre> <pre> [test_user@rocky7 helloworld]$ sbatch helloworld.r...") |
m |
||
| (2 intermediate revisions by 2 users not shown) | |||
| Line 11: | Line 11: | ||
'''helloworld.run''' | '''helloworld.run''' | ||
<pre> | <pre> | ||
#!/bin/bash | |||
#SBATCH --job-name=R_HELLOWORLD | #SBATCH --job-name=R_HELLOWORLD | ||
#SBATCH --output=R_hello_%j.out | #SBATCH --output=R_hello_%j.out | ||
| Line 16: | Line 18: | ||
module load R/4.2.1-foss-2022a | module load R/4.2.1-foss-2022a | ||
Rscript helloworld. | Rscript helloworld.R | ||
</pre> | </pre> | ||
| Line 36: | Line 38: | ||
<pre> | <pre> | ||
[test_user@rocky7 helloworld]$ ls | [test_user@rocky7 helloworld]$ ls | ||
helloworld.py helloworld.run | helloworld.py helloworld.run R_hell0_3875.out | ||
</pre> | </pre> | ||
<pre> | <pre> | ||
[test_user@rocky7 helloworld]$ cat | [test_user@rocky7 helloworld]$ cat R_hell0_3875.out | ||
Hello World! | Hello World! | ||
</pre> | </pre> | ||
Latest revision as of 18:37, 25 April 2023
R Code
helloworld.R
print("Hello World!")
Batch Script
helloworld.run
#!/bin/bash #SBATCH --job-name=R_HELLOWORLD #SBATCH --output=R_hello_%j.out module load R/4.2.1-foss-2022a Rscript helloworld.R
Running Job
[test_user@rocky7 helloworld]$ pwd /home/test_user/projects/R/helloworld
[test_user@rocky7 helloworld]$ ls helloworld.R helloworld.run
[test_user@rocky7 helloworld]$ sbatch helloworld.run Submitted batch job 3875
[test_user@rocky7 helloworld]$ ls helloworld.py helloworld.run R_hell0_3875.out
[test_user@rocky7 helloworld]$ cat R_hell0_3875.out Hello World!
