All public logs

From NIMBioS

Combined display of all available logs of NIMBioS. You can narrow down the view by selecting a log type, the username (case-sensitive), or the affected page (also case-sensitive).

Logs
(newest | oldest) View (newer 50 | ) (20 | 50 | 100 | 250 | 500)
  • 20:10, 28 February 2024 Jondale talk contribs created page Rocky R package (Created page with "= About = The R modules on Rocky have many packages pre-loaded but not all of them. If you find yourself needing one that isn't, you are able to install it locally in your home directory. = Installing = First we load the R module we want to use. For our example, we're going to use the R/4.2.2-foss-2022b module/version. <pre> module load R/4.2.2-foss-2022b </pre> Next we decide on a location for the R packages to be installed, make that directory, and then set th...")
  • 21:52, 12 February 2024 Jondale talk contribs created page Rocky Kivlin (Created page with "= About = Kivlin Lab has purchased compute resources on the Rocky cluster. These resources are only available to accounts associated with the Kivlin Lab. Please specify you are associated with the Kivlin Lab when requesting an account. = Exclusive Nodes = {| class="wikitable" |- ! Node !! Type !! Architecture !! vCPU !! Memory !! Exclusivity |- | bull1 || compute || Xeon Gold 6430 (Sapphire Rapids) || 128 || 512G || 2/12/202...")
  • 13:57, 24 August 2023 User account Nfefferm talk contribs was created automatically
  • 17:50, 24 May 2023 User account Lfarabau talk contribs was created automatically
  • 02:13, 29 April 2023 Jstratt7 talk contribs created page Rocky MATLAB Prime Array (Created page with "= Job Array = Job arrays allow you to run the same code many times with a different task id. The task id can then be used to determine which subset of your data to process. This strategy breaks your large job up into multiple smaller jobs that not only execute more quickly but can run concurrently. In the example of discovering prime numbers, lets say we want to discover all the primes in the first 1 million numbers. We could just create code that goes from 1 to 1000...")
  • 19:53, 28 April 2023 Jstratt7 talk contribs created page Rocky MATLAB HelloWorld (Created page with "= Code = '''helloworld.m''' <pre> fprintf("hello world"); </pre> = Batch Script = '''helloworld.run''' <pre> #!/bin/bash #SBATCH --job-name=MATLAB_HELLOWORLD #SBATCH --output=logs/matlab_helloworld_%j.out module load MATLAB/2022b matlab -nojvm -batch "run('helloworld.m');" </pre> = Running Job = <pre> [test_user@rocky7 helloworld]$ pwd /home/test_user/projects/matlab/helloworld </pre> <pre> [test_user@rocky7 helloworld]$ ls helloworld.m helloworld.run logs </p...")
  • 04:42, 21 April 2023 Jstratt7 talk contribs created page Rocky Python Prime Array (Created page with "= Job Array = Job arrays allow you to run the same code many times with a different task id. The task id can then be used to determine which subset of your data to process. This strategy breaks your large job up into multiple smaller jobs that not only execute more quickly but can run concurrently. In the example of discovering prime numbers, lets say we want to discover all the primes in the first 1 million numbers. We could just create code that goes from 1 to 1000...")
  • 18:26, 11 April 2023 Jstratt7 talk contribs created page Rocky Support (Created page with "= Supporting Rocky = Rocky grows through your financial support (e.g., direct costs built into grants or start up funds). By contributing to building and maintaining Rocky, you can assure priority access to the resources you contribute. = Node Costs = Below are examples of node costs. While we update the below list routinely, hardware prices change daily. The below table is meant to give a sense of scale and not a guaranteed cost. ==== Storage Node ==== Storage...")
  • 19:51, 10 April 2023 Jstratt7 talk contribs created page Rocky Environments (Created page with "= About = Rocky uses Lmod to easily set up environments for your projects. By default your Rocky session has a minimal of software/utilities available to you. By loading modules, environment variables and paths are set to give you easy access to not only language utilities and libraries but also specific versions of those. To use lmod, you will use the <code>module</code> command. = Loading Modules = By default, support for R is not loaded. <pre> [test_user@rocky7...")
  • 17:44, 10 April 2023 Jstratt7 talk contribs created page Rocky Python Prime (Created page with "= Python Code = '''prime.py''' <pre> MIN = 2 MAX = 100000 def is_prime(num): if num <= 1: return False else: for i in range(2, num): if (num % i) == 0: return False return True for i in range(MIN, MAX+1): if is_prime(i): print(i) </pre> = Batch Script = '''python-prime.run''' <pre> #SBATCH --job-name=PYTHON_PRIME #SBATCH --output=python_prime_%j.out module load Python python3 prime.py </pre> = Running Job = <pre> [test_user@rocky7 prime]$ pw...")
  • 17:17, 10 April 2023 Jstratt7 talk contribs created page Rocky R HelloWorld (Created page with "= R Code = '''helloworld.R''' <pre> print("Hello World!") </pre> = Batch Script = '''helloworld.run''' <pre> #SBATCH --job-name=R_HELLOWORLD #SBATCH --output=R_hello_%j.out module load R/4.2.1-foss-2022a Rscript helloworld. </pre> = Running Job = <pre> [test_user@rocky7 helloworld]$ pwd /home/test_user/projects/R/helloworld </pre> <pre> [test_user@rocky7 helloworld]$ ls helloworld.R helloworld.run </pre> <pre> [test_user@rocky7 helloworld]$ sbatch helloworld.r...")
  • 16:59, 10 April 2023 Jstratt7 talk contribs created page Rocky Python HelloWorld (Created page with "= Python Code = '''helloworld.py''' <pre> print("Hello World!") </pre> = Batch Script = '''helloworld.run''' <pre> #!/bin/bash #SBATCH --job-name=PYTHON_HELLOWORLD #SBATCH --output=python_hell0_%j.out module load Python python3 helloworld.py </pre> = Running Job = <pre> [test_user@rocky7 helloworld]$ pwd /home/test_user/projects/python/helloworld </pre> <pre> [test_user@rocky7 helloworld]$ ls helloworld.py helloworld.run </pre> <pre> [test_user@rocky7 helloworld]...")
  • 16:45, 10 April 2023 Jstratt7 talk contribs created page Rocky Job Anatomy (Created page with "= Anatomy of a Rocky Job = Setting up a job to run on Rocky starts by creating or uploading your project's files to the project directory within your home directory on Rocky. These files will include the code you've written, any data files needed, and a batch file. ==== Your Code ==== Your code is what is submitted and executed on Rocky's compute nodes.<br/> It can be written in any of the languages supported by Rocky environment modules (Lmod). ==== Your Data ===...")
(newest | oldest) View (newer 50 | ) (20 | 50 | 100 | 250 | 500)
Retrieved from "https://wiki.nimbios.org/Special:Log"